کد مقاله | کد نشریه | سال انتشار | مقاله انگلیسی | نسخه تمام متن |
---|---|---|---|---|
5762821 | 1412949 | 2017 | 21 صفحه PDF | دانلود رایگان |
عنوان انگلیسی مقاله ISI
From data to knowledge: The future of multi-omics data analysis for the rhizosphere
ترجمه فارسی عنوان
از داده ها به دانش: آینده تجزیه و تحلیل داده های چند ایکس برای ریزوسفر
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کلمات کلیدی
موضوعات مرتبط
علوم زیستی و بیوفناوری
علوم کشاورزی و بیولوژیک
علوم زراعت و اصلاح نباتات
چکیده انگلیسی
The rhizosphere is the interface between the root system of a plant and its surrounding soil. The microbiome of the rhizosphere, which is the totality of all microbes present there, represents a complex microbial ecosystem that nourishes the terrestrial biosphere. To untangle the complexity of the rhizosphere, and of the rhizospheric microbiome in particular, an integrated multi-omics approach can be applied to reveal the composition of the rhizospheric microbiome (through 16S ribosomal amplicons and metagenomics), the functional properties of the microbiome (through metatranscriptomics and metaproteomics), and the signaling network within the rhizosphere (through metametabolomics). The successful application of integrated multi-omics to rhizospheric science depends on the availability of rhizosphere-specific data and on the appropriate software used to analyze -omics data from the rhizosphere. In this review, we analyze the availability of software suites that are normally applied to surrogate disciplines (e.g., soil and plants) but which can be used for rhizospheric science. We also identify potential issues, challenges, and opportunities for rhizosphere science.
ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Rhizosphere - Volume 3, Part 2, June 2017, Pages 222-229
Journal: Rhizosphere - Volume 3, Part 2, June 2017, Pages 222-229
نویسندگان
Richard III, Mark I. Borkum, Albert Rivas-Ubach, Aivett Bilbao, Jason P. Wendler, Sean M. Colby, Martina Köberl, Christer Jansson,