Keywords: ASI; anthesis-silking interval; DEGs; differentially expressed genes; FPKM; fragments per kilobase per million fragments; FDR; p-value after adjusting for false discovery rate; GO; Gene Ontology; TFs; transcription factors; QTL; quantitative trait locus;
مقالات ISI (ترجمه نشده)
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Keywords: AS; alternative splicing; pre-mRNA; pre-messenger RNA; DEGs; differentially expressed genes; DETs; differentially expressed transcripts; WF42; 42-day-old White feather broiler; LN70; 70-day-old Luning Chicken; LN120; 120-day-old Luning Chicken; LN150; 1
Keywords: AGO; Argonaute; AMY3; alpha-amylase-like 3; APX; ascorbate peroxidase; ARF5/MP; Auxin response factor 5; BAM1; beta-amylase 1; CAT; catalase; CK; control check; COG; Clusters of Orthologous Groups of proteins; DEG; differential expression gene; ERF1; Ethy
Keywords: Grafted cucumber; Transcriptome; Flavor quality; Sugar; α-Linolenic acid metabolism; G1; fruit obtained from cucumber seedlings grafted onto figleaf gourd (Cucurbita ficifolia) rootstock; G2; fruit obtained from cucumber seedlings grafted onto 'Weishen
Keywords: ABA; abscisic acid; DTGs; differentially transcribed genes; ROS; reactive oxygen species; SOD; superoxide dismutase; POD; peroxidase; CAT; catalase; APX; ascorbate peroxidase; GR; glutathione reductase; COG; clusters of orthologous groups; FDR; false disc
Keywords: AKT; Arabidopsis K+ transporter; ALMT; aluminum-activated malate transporter; AMT; amino acid transporter; AQP; aquaporin; ATP1A; sodium/potassium-transporting ATPase; BASS2; sodium/pyruvate cotransporter; BPT; betaine/proline transporter; C-ATPase; catio
Keywords: Anthocyanin contents; Gene expression; Peach; RNA sequencing; 3GT; 3-O-glucosyltransferase; bHLH; basic Helix-Loop-Helix; BL; blood-flesh; CHI; chalcone isomerase; CHS; chalcone synthase; DFR; dihydroflavonol-4-reductase; F3â²H; Flavonoid 3â²-monooxygen
Keywords: BSA; bovine serum albumin; CGRP; calcitonin gene-related peptide; DPA; dynamic plantar aesthesiometer; FPKM; fragments per kilobase of exon per million reads mapped; GFAP; glial fibrillary acidic protein; GO; gene ontology; i.p.; intraperitoneal; Iba1; io
Keywords: Vaccinium; Transcriptome; Flavonoid biosynthesis; Anthocyanin biosynthesis; Fruit development; 4CL; 4-coumarate-CoA ligase; ANS; anthocyanidin synthase; BB; blue-stage Bluecrop fruit; BBP; pulp of blue, ripe-stage Bluecrop cultivar fruit; BBS; skin of blu
Keywords: NRVM; neonatal rat ventricular cardiomyocytes; smFISH; Single Molecule Fluorescent In-Situ Hybridization; CV; coefficient of variability; OPP; O-propargyl-puromcyin; AHA; l-azidohomoalaine; scRT-qPCR; single-cell quantitative polymerase chain reaction w
Keywords: CNS; central nervous system; FPKM; fragments per kilobase of exon region in a given gene per million mapped fragments; GDH; glutamate dehydrogenase; GO; gene ontology; MS; mass spectrometry; FCAP; feeding circuit-activating peptide; sCAP; small cardioacti
Keywords: DMEM; Dulbecco's modified eagle's medium; DM; differentiation medium; EDTA; Ethylene diamine tetraacetic acid; FPKM; Fragments per kilobase of exon per million fragments mapped; GO; gene ontology; KEGG; Kyoto encyclopedia of genes and genomes; PBS; phosph
Keywords: DEGs; differentially expressed genes; RE; receptive endometrium; PE; pre-receptive endometrium; RNA-Seq; RNA-sequencing; SNPs; single nucleotide polymorphisms; INDEL; insertion-deletion; AS; alternative splicing; DEU; differential exon usage; D5; gestatio
Keywords: DEGs; differentially expressed genes; EF; elongation factor; FPKM; fragments per kilo-base per million reads; GO; gene ontology; KEGG; Kyoto encyclopedia of genes and genomes; FDR; false discovery rate; MYB; myeloblastosis; ORF; open reading frame; OsWAK;
Keywords: SC; satellite cell; scRNA-seq; single cell RNA sequencing; FPKM; fragments per kilobase of transcript per million mapped reads; HSPG; heparan sulfate proteoglycan; NMF; non-negative matrix factorization; PCA; principal component analysis; RNABP; RNA bindi
Keywords: CCA; cholangiocarcinoma; CT; computerized axial tomography; CCND; cyclin D; DMSO; dimethyl sulfoxide; ELISPOT; enzyme linked immune-spot assay; FFPE; formaldehyde fixed-paraffin embedded tissue; FPKM; fragments per kilobase mapped; 18FDG; fluorodeoxygluco
Keywords: Hearing; Balance; Cochlea; Vestibule; RNA-Seq; Transcriptome; NMD; nonsense mediated decay; lincRNAs; long intervening non-coding RNAs; FPKM; Fragments per kilobase of exon per million reads mapped; NATs; Natural antisense transcripts; ncRNAs; non-coding
Keywords: Purple soot tea; Camellia sinensis; Anthocyanins; MYB transcriptional factor; RNA-Seq analysis; AE; Amplification efficiency; DEG; Differentially expressed gene; FDR; False discovery rate; FPKM; Fragments per kilobase of transcript per million reads; GO;
Keywords: RNA-sequencing; Inner ear; Noise; Transcriptome; FPKM; fragments per kilobase of transcript per million mapped reads; DAVID; Database for Annotation, Visualization and Integrated Discovery; KEGG; Kyoto Encyclopedia of Genes and Genomes; IPA; Ingenuity Pat
Keywords: L. major; Leishmania major; BLAST; Basic Local Alignment Search Tool; GRAVY; grand average of hydropathy index; Nc; effective number of codon; CAI; Codon Adaptation Index; FPKM; Fragments Per Kilobase of exon per Million fragments mapped; Orphan genes; Ev
Keywords: AMD; age-related macular degeneration; eQTL; expression quantitative trait loci; GWAS; genome-wide association studies; FPKM; Fragments Per Kilobase of gene per Million mapped fragment; MAQC; MicroArray Quality Control; MR; macular retina; PLIER; Probe Lo
Keywords: FPKM; fragments per kilobase per million library reads; TE; transposable element; LINE; long interspersed nuclear element; MaSp; major ampullate silk protein; TSS; transcription start site; TF; transcription factor; MBE; musashi binding element; LTR; long
Keywords: Nasal airway epithelium; transcriptome; TH2; asthma; bronchial airway epithelium; CLCA1; Calcium-activated chloride channel regulator 1; CPA3; Carboxypeptidase A3 gene; FPKM; Fragments per kilobase of transcript per million mapped reads; GALA II; Genes-en
Genome-wide identification and analysis of the evolution and expression patterns of the GATA transcription factors in three species of Gossypium genus
Keywords: QTL; quantitative trait locus; FPKM; fragments per kilobase of exon per million fragments mapped; SNP; single nucleotide polymorphisms; qRT-PCR; quantitative real-time PCR; DPA; days post anthesis; SRA; sequence read archive; NCBI; National Center for Bio
Transcriptome profiling and identification of the functional genes involved in berry development and ripening in Vitis vinifera
Keywords: Early ripening; Transcriptome; Mutant; Sequencing; Vitis vinifera; ABA; abscisic acid; ABF; ABRE binding factor; ACO; ACC oxidase; ACS; ACC synthase; ARF; auxin response factor; CIPK; CBL-interacting protein kinase; DEG; differentially expressed gene; FPK
The role of l-alanine metabolism revealed by transcriptome analysis in Vibrio alginolyticus
Keywords: (NH4)2SO4; ammonium sulfate; AvtA; valine-pyruvate aminotransferase; YfbQ; alanine-synthesizing transaminase; AlaC; glutamate-pyruvate aminotransferase; PCR; polymerase chain reaction; MIxS; Minimum Information about any (X) Sequence; FPKM; Fragments Pe
The effects of Capn1 gene inactivation on the differential expression of genes in skeletal muscle
Keywords: KO; knockout; WT; wild type; DEG; differentially expressed genes; GO; gene ontology; RIN; RNA integrity number; IPA; Ingenuity® Pathway Analysis; FPKM; fragments per kilobase of transcript per million mapped fragments; NO; nitric oxide; RIIβ; protein ki
Transcriptomics reveals tissue/organ-specific differences in gene expression in the starfish Patiria pectinifera
Keywords: BW; body wall; CE; coelomic epithelium; TF; tube feet; SM; stomach; PC; pyloric caeca; GN; gonad; BUSCO; Benchmarking Universal Single-Copy Orthologs; KOG; EuKaryotic Orthologous Groups; ORFs; open reading frames; NR; non-redundant; GO; gene ontology; KEG
Whole transcriptome analysis reveals potential novel mechanisms of low-level linezolid resistance in Enterococcus faecalis
Keywords: ABC; ATP-binding cassette; BHI; Brain Heart Infusion; CDSs; Coding sequences; COGs; Cluster of Orthologous Groups; DEG; Differentially expressed gene; FDR; False discovery rate; FPKM; Fragments per kilobase exon per million mapped fragments; GO; Gene Onto
Heat shock stress: Profile of differential expression in Corynebacterium pseudotuberculosis biovar Equi
Keywords: Cp258; Corynebacterium pseudotuberculosis 258; RT; room temperature; BHI; Brain Heart Infusion; rpm; rotation per minute; FPKM; fragments per Kilobase of Exon per Million Fragments Mapped; Transcriptomics; Corynebacterium pseudotuberculosis; RNA-seq; Heat
Temporal transcriptome analysis of the white-rot fungus Obba rivulosa shows expression of a constitutive set of plant cell wall degradation targeted genes during growth on solid spruce wood
Keywords: AA; auxiliary activity; AAO; aryl alcohol oxidase; AE; acetylesterase; AGL; α-galactosidase; AGU; α-glucuronidase; AOX; alcohol oxidase; BGL; β-1,4-glucosidase; CAZy; CAZyme, carbohydrate-active enzyme; CBH; cellobiohydrolase; CDH; cellobiose dehydroge
Transcriptional profiling of the ductus arteriosus: Comparison of rodent microarrays and human RNA sequencing
Keywords: Ao; aorta; DEG; differentially expressed gene; bioDBnet; biological Database network; BP; biological process; CC; cellular component; DAVID; database for annotation, visualization, and integrated discovery; ECM; extracellular matrix; FDR; false discovery
Comparative transcriptomics of Pleurotus eryngii reveals blue-light regulation of carbohydrate-active enzymes (CAZymes) expression at primordium differentiated into fruiting body stage
Keywords: AAs; auxiliary activities; CDS; coding DNA sequence; CEs; carbohydrate esterases; CBMs; carbohydrate-binding modules; COG; Cluster of Orthologous Groups; DEGs; differentially expressed genes; FDR; false discovery rate; FPKM; Fragments Per Kilobase of tran
Genome-wide identification and characterization of lncRNAs and miRNAs in cluster bean (Cyamopsis tetragonoloba)
Keywords: lncRNAs; long non coding RNAs; SSR; Simple Sequence Repeat; eTM; endogenous Target Mimic; ncRNAs; non-coding RNAs; COLDAIR; cool-assisted intronic non-coding RNA; COOLAIR; cold-assisted intronic non-coding RNA; FLC; Flowering Locus C; LDMAR; long-day-spec
Carbamazepine-induced suppression of repetitive firing in CA1 pyramidal neurons is greater in the dorsal hippocampus than the ventral hippocampus
Keywords: mTLE; medial temporal lobe epilepsy; AED; anti-epileptic drug; DHC; dorsal hippocampus; dIHC; dorsal intermediate hippocampus; vIHC; ventral intermediate hippocampus; VHC; ventral hippocampus; ISA; somatodendritic A-type current; IM; m-current; GIRK; chan
Changes in fenugreek transcriptome induced by methyl jasmonate and steroid precursors revealed by RNA-Seq
Keywords: CHL; cholesterol; FPKM; fragments per kilobase of transcript per million mapped reads; KCHL; pool of transcriptome after cholesterol treatment; KK; pool of control transcriptome; KMeJ; pool of transcriptome after methyl jasmonate treatment; KSQ; pool of t
Characterization of metabolic network of oxalic acid biosynthesis through RNA seq data analysis of developing spikes of finger millet (Eleusine coracana): Deciphering the role of key genes involved in oxalate formation in relation to grain calcium accumul
Keywords: SGAT; Serine Glyoxalate Amino-Transferase; GGAT; Glutamate Glyoxylate Amino-Transferase; ICL; Isocitrate Lyase; GLO; Glyoxal Oxidase; MHAR; Mono Dehydro Ascorbate Reductase; APO; Ascorbate Per Oxidase; OXO; Oxalate Oxidase; FPKM; Fragments Per Kilobase of
The transcriptome analyses of Tagetes erecta provides novel insights into secondary metabolite biosynthesis during flower development
Keywords: Cq; Quantification Cycle; DEG; Differentially Expressed Gene; FDR; False Discovery Rate; FPKM; Fragments Per Kilobase of exon model per Million mapped reads; GO; Gene Ontology; NCBI; National Center for Biotechnology Information; qRT-PCR; Quantitative Rev
Lrp6 is a target of the PTH-activated αNAC transcriptional coregulator
Keywords: αNAC; α chain of nascent polypeptide associated complex; PTH; Parathyroid Hormone; PKA; protein kinase A; ChIP; chromatin immunoprecipitation; ChIP-Seq; ChIP-sequencing; LRP6; Low density lipoprotein receptor-Related Protein 6; iPTH; intermittent PTH; P
De novo transcriptome assembly, gene expressions and metabolites for flower color variation of two garden species in Brassicaceae
Keywords: ANS; anthocyanidin synthase; bHLH; basic-helix-loop-helix; CHS; chalcone synthase; C4H; cinnamate-4-hydroxylase; 4CL; 4-coumarate:CoA ligase; CHI; chalcone Isomerase; DEGs; differentially expressed genes; DFR; dihydroflavonol4-reductase; EGL3; enhancer of
Gene network of oil accumulation reveals expression profiles in developing embryos and fatty acid composition in Upland cotton
Keywords: BP; biological process; CC; cellular component; CTAB; cetyltrimethyl ammonium bromide; DAG; diacylglycerol; DEGs; differentially expressed genes; DPA; days post-anthesis; ER; endoplasmic reticulum; FAs; fatty acids; FPKM; fragments per kilobase of exon pe
Synergistic effect of abscisic acid and ethylene on color development in tomato (Solanum lycopersicum L.) fruit
Keywords: ABA; abscisic acid; ABRE; cis-acting element involved in the abscisic acid responsiveness; CHS; chalcone synthase; C4H; cinnamate 4-hydroxylase; DXS; deoxyxylulose-5-phosphate synthase; ERE; ethylene-responsive element; FLS; flavonol synthase; FPKM; fragm
Transcriptomic analysis of chicken cochleae after gentamicin damage and the involvement of four signaling pathways (Notch, FGF, Wnt and BMP) in hair cell regeneration
Keywords: Transcriptomic; Chicken cochlea; Signaling pathway; Regeneration; Antibiotic toxicity; MAPK; mitogen-activated protein kinase; FGF; fibroblast growth factor; TGF-β; transforming growth factor-β; BMP; bone morphogenetic protein; SAGE; serial analysis of
Modular organization analysis of specific naringin/neoeriocitrin related gene expression induced by UVC irradiation in Drynaria roosii
Keywords: bHLH; basic helix-loop-helix; C3H; p-coumarate 3-hydroxylase; C3'H; p-coumarate 3â²-hydroxylase; C4H; cinnamate 4-hydroxylase; CHI; chalcone isomerase; CHS; chalcone synthase; 4CL; 4-coumarate CoA ligase; CNR; new rhizome; CNRCK; new rhizome treated fo
Transcriptomic analysis of Momordica charantia polysaccharide on streptozotocin-induced diabetic rats
Keywords: M. charantia; Momordica charantia; RNA-seq; RNA sequencing; T2DM; Type 2 diabetes mellitus; IR; insulin resistance; PPAR; peroxisome proliferator-activated receptor; FBG; fasting blood glucose; G6Pase; glucose-6-phosphatase; PEPCK; phosphoenol pyruvate ca
Lysophosphatidylcholine induces expression of genes involved in cholesterol biosynthesis in THP-1 derived macrophages
Keywords: LPC; lysophosphatidylcholine; PCA; principal component analysis; FFA; free fatty acids; DMSO; dimethyl sulfoxide; FPKM; fragments per kilobase of transcript per million fragments mapped; RT-PCR; reverse transcription polymerase chain reaction; KEGG; Kyoto
Comparative antennal transcriptome of Apis cerana cerana from four developmental stages
Keywords: DEGs; differentially expressed genes; FPKM; fragments per kilobase of transcript per million mapped reads; STEM; Short Time-series Expression Miner; MRJPs; major royal jelly; sHSP; small heat shock protein; GO; Gene Ontology; KEGG; Kyoto Encyclopedia of G
Ancient horizontally transferred genes in the genome of California two-spot octopus, Octopus bimaculoides
Keywords: HGT; horizontal gene transfer; EB; ethidium bromide; FPKM; fragments per kilobase of exon per million fragments mapped; dN/dS; nonsynonymous or synonymous substitutions; ML; maximum likelihood method; NJ; neighbor-joining method; BI; Bayesian inference me
Transcriptome analysis of starch and sucrose metabolism across bulb development in Sagittaria sagittifolia
Keywords: GO; Gene ontology; KEGG; Kyoto encyclopedia of genes and genomes; DEGs; Differentially expressed genes; Susy; Sucrose synthase; INV; Invertase; SPS; Sucrose-phosphate synthase; ADPG; Adenosine diphosphate glucose; GBSS; Granule-bound starch synthase; SBE;
Crustacean cardioactive peptides: Expression, localization, structure, and a possible involvement in regulation of egg-laying in the cuttlefish Sepia officinalis
Keywords: ACN; acetonitrile; CCAPs; crustacean cardioactive peptides; CHCA; α-cyano-4-hydroxycinnamic acide; CNS; central nervous system; DTT; dithiothreitol; ELH; egg-laying hormone; FPKM; fragments per kilobase of exon per million fragments mapped; MNG; main nid