Keywords: DEGs; differentially expressed genes; RPKM; reads per kilobase per million reads; GO; gene ontology; KEGG; Kyoto encyclopedia of genes and genomes; ZG; zhongguo; XY; xiangyang; PPI; protein-protein interaction; RSEM; RNA-seq by Expectation Maximization;
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Keywords: RNA-seq; RNA sequencing; GO; gene ontology; KEGG; Kyoto Encyclopedia of Genes & Genome, GENES database; GPCR; G-protein-coupled receptor; Poecilobdella javanica; P. javanica; Hirudo medicinalis; H. medicinalis; Haemadipsa cavatuses; H. cavatuses; Whitmani
Keywords: DEGs; Differentially expressed genes; RPKM; Reads per kilobase per million mapped reads; GO; Gene Ontology; KEGG; Kyoto Encyclopedia of Genes and Genomes; IAA; Auxin; CK; Cytokinin; SSH; Suppression subtractive hybridization; N. tabacum; Nicotiana tabacum
Keywords: Rosa chinensis; Flower fragrance; Monoterpene biosynthesis pathways; Terpene synthases; (â)-(3R)-linalool; (+)-(3S)-linalool; Nerolidol; DMAPP; dimethylallyl diphosphate; EST; expressed sequence tag; FPP; farnesyl pyrophosphate; GFP; green fluorescent p
Keywords: RPKM; reads per kilobase of transcript per million mapped reads; FGF; fibroblast growth factor; ETS; E26 transformation-specific or E-twenty-six; LTs; leukotrienes; ALOX5; arachidonate 5-lipoxygenase; LTA4; leukotriene A4; LTB4; leukotriene B4; LTC4; leuk
Keywords: Vtg; Vitellogenin; PPAR; peroxisome proliferator-activated receptor delta-like; GPCR; G protein-couple receptor; RXR; retinoid X receptor; ERR; estrogen receptor-related receptor; RPL 7; ribosomal protein 7; ORF; open reading frame; RPKM; reads per kiloba
Keywords: EPI; enhancer-promoter interaction; E-P; enhancer-promoter; 5C; Carbon Copy Chromosome Capture Conformation; ChIA-PET; Chromatin Interaction Analysis by Paired-End Tag Sequencing; FISH; Fluorescence In Situ Hybridization; ChIP-seq; chromatin immunoprecipi
Keywords: Triticum aestivum; Salt tolerance; qRT-PCR; Transcriptome; qPCR; quantitative polymerase chain reaction; SOM; self-organizing mapping; EST; expressed sequence tag; EMS; ethyl methyl sulfonate; RNA-Seq; RNA-Sequence; CDD; conserved domain database; Pfam; p
Keywords: Anaphylaxis; food allergy; lipid transfer protein syndrome; nonsteroidal anti-inflammatory drugs; transcriptome analysis; ADORA3; Adenosine receptor 3; α-gal; Galactose α-1,3-galactose; HV; Healthy volunteer; IPA; Ingenuity Pathway Analysis; LTP; Lipid
Keywords: SF; seed-filling; PF; pod-filling; DE; differential expression; GO; gene ontology; RPKM; Reads per Kilobase per Million mapped reads; FA; fatty acids; Peanut; Oil biosynthesis pathway; RNA-Seq; Transcriptome; Seed filling;
Keywords: SI; self-incompatibility; RNA-Seq; high throughput sequencing of cDNA libraries; RPKM; reads per kilo bases per million reads; FDR; false discovery rate; 2-DE; two-dimensional gel electrophoresis; TCA; tricarboxylic acid; GO; gene ontology; KEGG; Kyoto en
Keywords: NGB/Ngb; human/mouse neuroglobin gene and mRNA; NGB/Ngb; human/mouse neuroglobin protein; qRT-PCR; quantitative real-time reverse-transcriptase PCR; RNA-Seq; RNA sequencing; RPKM; reads per kilobase exon model per million mapped reads; mRNA expression; Hy
Keywords: Genetics; Risk Factors; SNP; GWAS; ARIC; Atherosclerosis Risk in Communities Study; BioVU; Vanderbilt DNA Biobank; BMI; body mass index; CI; confidence intervals; eSNP; expression single-nucleotide polymorphism; eQTL; expression quantitative trait loci; F
Keywords: VOL; semen volume per ejaculate; SCON; sperm concentration; MOT; motility; ASR; abnormal sperm rate; DEGs; differentially expressed genes; RPKM; per million mapped reads; AS; alternative splicing; SNP; single nucleotide polymorphism; QTL; quantitative tra
Keywords: Archaea; Thermococcales; Genome evolution; Mobile elements; Bioinformatics; Chromosomal landmarks; dif; chromosome dimer resolution site; NCBI; National Center for Biotechnology Information; nt; nucleotide; ORB; origin recognition boxes; oriC; origin of r
Keywords: RNA-Seq; RNA sequencing; RPKM; reads per kilobase of exon model per million mapped reads; Std.; standard deviation; TMM; trimmed mean of M values; Data correction; Gene expression; Inter-replicate bias; Inter-treatment bias;
Divergent roles of the Drosophila melanogaster globins
Keywords: GFP; green fluorescent protein; GO; gene ontology; Hb; hemoglobin; qRT-PCR; quantitative real-time RT-PCR; ROS; reactive oxygen species; RPKM; Reads Per Kilobase per Million mapped reads; S2 cell; D. melanogaster Schneider 2 cells; Development; Drosophila
Mapping podophyllotoxin biosynthesis and growth-related transcripts with high elevation in Sinopodophyllum hexandrum
Keywords: asl; above sea level; DEGs; differentially expressed genes; DR; down-regulated; GO; gene ontology; KEGG; Kyoto Encyclopedia of Genes and Genomes; KOG; euKaryotic orthologous groups of proteins; NCBI; National Center for Biotechnology Information; NR; non-
Downregulation of aldose reductase is responsible for developmental abnormalities of the silkworm purple quail-like mutant (q-lp)
Keywords: q-lp; purple quail-like; AR; aldose reductase; BmAR; Bombyx mori aldose reductase; 2-DE; two-dimensional gel electrophoresis; qRT-PCR; quantitative reverse transcription PCR; NADPH; nicotinamide adenine dinucleotide phosphate; SDS-PAGE; sodium dodecyl sul
Transcriptomic analysis of Ehrlichia ruminantium during the developmental stages in bovine and tick cell culture
Keywords: BA886; Bovine aorta endothelial cell lines; BovEBs; Bovine cell derived EBs; BovRBs; Bovine cell derived RBs; cDNA; Complementary DNA; Ct; Threshold value; CTL; Cytotoxic T-lymphocytes; DNA; Deoxyribonucleic acid; EB; Elementary body; EDGE; Empirical anal
Analysis of the meiotic transcriptome reveals the genes related to the regulation of pollen abortion in cytoplasmic male-sterile pepper (Capsicum annuum L.)
Keywords: CMS; cytoplasmic male sterility; PMCs; pollen mother cells; PCD; programmed cell death; RNA-seq; RNA sequencing; DEGs; differentially expressed genes; SCAR; sequence-characterized amplified region; TUNEL; terminal deoxynucleotidyl transferase dUTP nick en
Molecular characterization of physis tissue by RNA sequencing
Keywords: NCATS; National Center for Advancing Translational Sciences; NIH; National Institutes of Health; COL2A1; collagen Type II alpha 1 chain; COL6A1; collagen type VI alpha 1 chain; COL9A1; collagen type IX alpha 1 chain; COL9A2; collagen type IX alpha 2 chain
Molecular characterization of the TaWTG1 in bread wheat (Triticum aestivum L.)
Keywords: QTL; Quantitative trait loci; TFBS; transcription factor binding sites; CDS; coding sequences; ESTs; Expression sequence tags; RPKM; Reads per kilobase per million reads; tpm; transcripts per million; Expression pattern; Structure; Transcription factor; S
Identification of genes regulating GABAergic interneuron maturation
Keywords: GABA; gamma-aminobutyric acid; GE; ganglionic eminence; Gad67; glutamic acid decarboxylase-67; FACS; fluorescence activated cell sorting; Dgkg; diacylglycerol kinase gamma; SST; somatostatin; PV; parvalbumin; Vstm2a; V-set and transmembrane domain contain
Integrated omics analysis of root-preferred genes across diverse rice varieties including Japonica and indica cultivars
Keywords: ABA; abscisic acid; AtEXPA7; arabidopsis thaliana expansin A7; CREs; cis regulatory elements; EXPA; alpha-expansin; GEO; gene expression omnibus; GO; gene ontology; MFO1; mosaic floral organs1; ROAD; rice oligonucleotide array database; RPKM; reads per ki
Human Fetal-Derived Enterospheres Provide Insights on Intestinal Development and a Novel Model to Study Necrotizing Enterocolitis (NEC)
Keywords: Necrotizing Enterocolitis; Fetal Organoids; Enteroids; AD; adult duodenal; AEnS; adult-derived enterospheres; CLDN; claudin; ÎÎCT; relative threshold cycle; CXCL; chemokine (C-X-C motif) ligand; DMEM; Dulbecco's modified Eagle medium; EGF; epidermal gro
Identification of 'Xinlimei' radish candidate genes associated with anthocyanin biosynthesis based on a transcriptome analysis
Keywords: DEG; Differentially Expressed Genes; KEGG; Kyoto Encyclopedia of Genes and Genomes; PAL; Phenylalanine Ammonia Lyase; C4H; Cinnamate 4-Hydroxylase; 4CL; 4-Coumarate CoA Ligase; CHS; Chalcone Synthase; CHI; Chalcone Isomerase; F3H; Flavanone 3-Hydroxylase;
Association study of SREBF-2 gene polymorphisms and the risk of type 2 diabetes in a sample of Iranian population
Keywords: T2D; type 2 diabetes mellitus; SREBF-2; sterol regulatory element-binding factor-2; SNPs; single nucleotide polymorphisms; Tetra ARMS-PCR; using tetra amplification refractory mutation system polymerase chain reaction; RPKM; reads per kilobase million; CA
Physiological and pathophysiological implications of PGE2 and the PGE2 synthases in the kidney
Keywords: AA; arachidonic acid; CCD; cortex collecting duct; CD; collecting duct; COX; cyclooxygenase; DCT; distal convoluted tubule; DTL; descending thin limb; EP; E-prostanoid receptor (PGE2 receptor); IMCD; inner medullary collecting duct; KO; knockout; MCD; med
Differential methylation and expression of HUA1 ortholog in three sex types of papaya
Keywords: AG; AGAMOUS; AP3; APETELA3; PI; PISTILLATA; SEP; SEPALLATA; PLE; PLENA; STK; SEEDSTICK; mh mutant; cold treated male to hermaphrodite sex reversal mutant; FLC; FLOWERING LOCUS C; bp; base pair; RPKM; reads per kilobase of exon per million fragments mapped
Recognition of the long range enhancer-promoter interactions by further adding DNA structure properties and transcription factor binding motifs in human cell lines
Keywords: Enhancer-promoter interaction; Epigenetics; DNA structure properties; Transcription factors binding motifs; EPI; enhancer-promoter interaction; E-P; enhancer-promoter; RF; Random Forest; GBM; Gradient Boosting Machine; TFs; transcription factors; HMs; His
Multiple R genes and phenolic compounds synthesis involved in the durable resistance to Phytophthora infestans in potato cv. Cooperation 88
Keywords: 3GT; anthocyanidin 3-O-glucosyltransferase; 5GT; anthocyanidin 5-O-glucosyltransferase; A5AAT; anthocyanin 5-aromatic acyltransferase; AAT; anthocyanin acyltransferase; ACX1; acyl-CoA-oxidase 1; AGT; anthocyanin glucosyltransferase; ANP; anthocyanin perme
Gene expression changes in the ventral hippocampus and medial prefrontal cortex of adolescent alcohol-preferring (P) rats following binge-like alcohol drinking
Keywords: Hippocampus; Prefrontal cortex; Binge drinking; Alcohol; P; alcohol-preferring; vHip; ventral hippocampus; mPFC; medial prefrontal cortex; DRN; dorsal raphe nucleus; PAG; periaqueductal gray; CeA; central core of the amygdala; Acbshell; nucleus accumbens
miRNAome, mRNAome and degradome analysis of Tibetan minipigs anterior pituitary
Keywords: 3â²-UTR; 3â²-untranslated region; cDNA; complementary DNA; CGA; glycoprotein hormones, alpha polypeptide; ELMO3; engulfment and cell motility 3 gene; ERAL1; Era (E. coli G-Protein Homolog)-Like 1; FSHB; follicle stimulating hormone beta subunit; GH; gro
Transcriptome analysis of Cyrtotrachelus buqueti in two cities in China
Keywords: RT-qPCR; quantitative real-time PCR; RPKM; reads per kilobase million mapped reads; DEGs; differentially expressed genes; FDR; false discovery rate; Cyrtotrachelus buqueti; Transcriptome analysis; Quantitative distribution; Ribosome; Folate metabolism; He
Comparative transcriptome analysis reveals multiple functions for Mhy1p in lipid biosynthesis in the oleaginous yeast Yarrowia lipolytica
Keywords: ACL; ATP-citrate lyase; cAMP; cyclic AMP; CS; citrate synthase; GABA; gamma-aminobutyric acid; GC; gas chromatograph; Gcn2; general control nonderepressible 2; GO; Gene Ontology; IPM; isopropylmalate; KEGG; Kyoto Encyclopedia of Genes and Genomes; LP; lip
Transcriptional profiling of the CAM plant Agave salmiana reveals conservation of a genetic program for regeneration
Keywords: CAM; Crassulacean Acid Metabolism; ORF; Opening Reading Frame; NGS; Next-Generation Sequencing; CO2; Carbone Dioxide; PEG; Preferentially Expressed Genes; BAP; 6-benzylaminopurine; CIM; Callus Induction Media; RIN; RNA Integrity Number; FAE; Formaldehyde/
Deep sequencing of antennal transcriptome from Callosobruchus chinensis to characterize odorant binding protein and chemosensory protein genes
Keywords: Antennal transcriptome; Odorant binding proteins; Chemosensory proteins; Phylogenetic analysis; PCR; Polymerase chain reaction; cDNA; Complementary DNA; BLAST; Basic local alignment search tool; RPKM; Reads per kilobase per million mapped reads; Nr; Non r
Transcriptional profiling of Rickettsia prowazekii coding and non-coding transcripts during in vitro host-pathogen and vector-pathogen interactions
Keywords: AAE2; Amblyomma americanum cells; CDS; coding sequence; gltA; citrate synthase gene; HMECs; human microvascular endothelial cells; MEV; mean expression value; Rp_sR; Rickettsia prowazekii small ribonucleic acid; RPKM; reads per kilobase per million; TEX;
8-Oxoguanine DNA glycosylase1-driven DNA repair-A paradoxical role in lung aging
Keywords: 8-oxoG; 7,8-dihydro-8-oxoguanine; 8-oxodG; 7,8-dihydro-8-oxo-2â²-deoxyguanosine; BER; base excision repair; DNA dsbs; double strand breaks; DNA ssbs; single strand breaks; GEF; guanine nucleotide exchange factor; GOrilla; Gene Ontology enrichment analysi
Full length articleEvolutionary developmental biology (evo-devo) of cestodes
Keywords: Neodermata; Oncosphere; Metacestode; Echinococcus; Hymenolepis; Planarian; AP; antero-posterior; DAPI; 4â²,6-diamidino-2-phenylindole; RNAi; RNA interference; RPKM; reads per kilobase per million reads; WMISH; whole-mount in situ hybridization;
Transcriptome profiling and expression analysis of immune responsive genes in the liver of Golden mahseer (Tor putitora) challenged with Aeromonas hydrophila
Keywords: Immune response; Bacterial challenge; Transcriptome sequencing; Differential gene expression; Complement system; Tissue specific expression; qPCR expression; DGE; Differential gene expression; FDR; False discovery rate; GO; gene ontology; HSP; Heat shock
Long noncoding RNAs: Unexplored players in the drug response of the sea louse Caligus rogercresseyi
Keywords: lncRNAs; long non-coding RNAs; GC; guanine-cytosine; ncRNAs; non-coding RNAs; miRNAs; microRNAs; siRNAs; small interfering RNAs; piRNAs; PIWI-interacting RNAs; MFE; minimum free energy; RPKM; transcript as reads per kilobase of exon model per million mapp
Digital gene expression profiling of flax (Linum usitatissimum L.) stem peel identifies genes enriched in fiber-bearing phloem tissue
Keywords: DGE; digital gene expression; DEGs; differentially expressed genes; qRT-PCR; quantitative real-time PCR; GO; the Gene Ontology database; KEGG; The Kyoto Encyclopedia of Genes and Genomes database; ESTs; expressed sequence tags; L; leaf samples; SP; stem p
Genes directly regulated by NF-κB in human hepatocellular carcinoma HepG2
Keywords: HCC; Hepatocellular carcinoma; TNFα; tumor necrosis factor α; LPS; lipopolysaccharide; PMA; phorbol myristate acetate; UV; virus and ultraviolet; TF; transcription factor; NF-κB; nuclear factor κB; HBV; hepatitis B virus; HCV; hepatitis C virus; DTGs;
De novo transcriptome sequencing and analysis of the juvenile and adult stages of Fasciola gigantica
Keywords: Nr; non-redundant protein database; GO; Gene Ontology; KOG; EuKaryotic Orthologous Groups of proteins database; KEGG; Kyoto Encyclopedia of Genes and Genomes; SSR; simple sequence repeat; NCBI; National Center for Biotechnology Information; RPKM; reads pe
Transcriptomic analysis of flower development in tea (Camellia sinensis (L.))
Keywords: RNA-Seq; RNA sequencing; DEGs; Differentially expressed genes; GO; Gene Ontology; KEGG; Kyoto Encyclopedia of Genes and Genomes; RPKM; Reads per kb per million; COG; Clusters of orthologous groups; bHLH; Basic helix-loop-helix; GI; Gigantea; PIF3; Phytoch
Characterization of transcriptome in the Indian meal moth Plodia interpunctella (Lepidoptera: Pyralidae) and gene expression analysis during developmental stages
Keywords: NR; NCBI non-redundant proteins; NT; NCBI nucleotide sequences; GO; Gene Ontology; COG; Cluster of Orthologous Groups; KEGG; Kyoto Encyclopedia of Genes and Genomes; NGS; Next-generation sequencing; cDNA; DNA complementary to RNA; RPKM; Reads per kilobase
RElative QUantitation Inferred by Evaluating Mixtures (REQUIEM)
Keywords: Relative quantitation; Precision; Accuracy; Mass spectrometry; RNA-Seq; ES; embryonic stem (cells); GC-FID; gas chromatography with flame ionization detection; HPAEC-PAD; high performance anion exchange chromatography with pulsed amperometric detection; R
Integrated transcriptomic and proteomic analysis of the bile stress response in probiotic Lactobacillus salivarius LI01
Keywords: LGG; Lactobacillus rhamnosus GG; DGE; digital gene expression; iTRAQ; isobaric tags for relative and absolute quantitation; RT; room temperature; RPKM; reads per kilobase of exon model per million mapped reads; DEGs; differentially expressed genes; FDR; f